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表观遗传学在线资源及工具/Selected Online Resources for Epigenetics

2021-05-17
浏览次数： 112
Consortia and Initiatives
The NIH Roadmap Epigenomics Program
A NIH Initiative to foster epigenomic research, develop comprehensive reference epigenome maps, and generate new technologies for comprehensive epigenomic analyses.
http://nihroadmap.nih.gov/epigenomics/
 
The Epigenome Network of Excellence
An EU-funded network of institutions and research groups
http://www.epigenome-noe.net/Whttp://nihroadmap.nih.gov/epigenomics/ WW/index.php 

The Human Epigenome Projects
A public/private collaboration to catalogue Methylation Variable Positions (MVPs) in the human genome
http://www.epigenome.org/

NAME21
A German National Initiative to analyze DNA methylation Patterns of Genes on Chromosome 21
http://biochem.jacobs-university.de/name21/

Databases
The Human Epigenome Atlas
The atlas includes human reference epigenomes and the results of their integrative and comparative analyses.
http://www.genboree.org/epigenomeatlas/index.rhtml

MethDB
A searchable database for DNA methylation and environmental epigenetic effects
http://www.methdb.de/

Human Histone Modification Database (HHMD)
A searchable database of information from experimental data to facilitate understanding of histone modifications at a systematic level. The current release incorporates 43 locations-specific histone modifications in human.
http://bioinfo.hrbmu.edu.cn/hhmd

NCBI Epigenomics
An online repository of epigenetic datasets
http://www.ncbi.nlm.nih.gov/epigenomics/browse

GeneImprint
A catalogue of imprinted genes
http://www.geneimprint.com/site/genes-by-species

Catalogue of Parent of Origin Effects
Searchable database of imprinted genes and related effects
http://igc.otago.ac.nz/home.html

Tools and Other Resources
MethPrimer
Primer Design for Methylation PCR
http://www.urogene.org/methprimer/index1.html

MethBlast
A sequence similarity program that checks your primers for bisulfite converted DNA by blasting them against unmethylated and methylated genomic sequences of man, mouse and rat
http://medgen.ugent.be/methBLAST/

Methylator
Methylator attempts to predict whether CpGs in a DNA sequence are likely to be methylated or not
http://bio.dfci.harvard.edu/Methylator/

RMAP
RMAP is a tool to map reads from the next-generation sequencing technology that supports bisulfite-treated reads mapping.
http://rulai.cshl.edu/rmap/

Chromatin Structure & Function
Information on chromatin biology, histones and epigenetics
http://www.chromatin.us/chrom.html

Epigenetic Station
A source for information, protocols, methods, techniques, products, vendors, kits, assays, analysis, bioinformatics and databases on Epigenetics
http://epigeneticstation.com/
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